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Search variations between Morex and barley varieties

AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

OUN333 Genome

Main information

Part of the barley pan-genome, containing chromosome-scale sequence assemblies of 20 diverse varieties of barley. OUN333 is collected and named by the Barley Germplasm Center at the Institute for Agricultural and Biological Sciences (renamed as Research Institute for Bioresources in 1989), Okayama University. OUN333 is originally located in Nepal.
Species: Hordeum vulgare 
Full name: OUN333
Germplasm source:

Nepal

Genome URL: https://barley-pangenome.The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)-gatersleben.de/
DOI: https://doi.org/10.1038/s41586-020-2947-8
Published year: 2020-11-25
Length Annotation count
Genome
(excluding_ChrUn): 		4408103385 30093820
Chr1H 543344542 3226270
Chr2H 697540743 4211255
Chr3H 655862368 4843175
Chr4H 646765634 4480946
Chr5H 618540729 4137133
Chr6H 587963859 5325935
Chr7H 658085510 3869106

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 10518 42 3512 17773 15623 10601 15707 2822045 133325 124333 9706 748 7542 793
Chr2H 14921 94 5734 28733 23166 16235 22782 3651007 178339 167938 12020 902 9289 962
Chr3H 14490 85 5284 23977 22141 14417 21991 4268703 195635 183907 11127 986 8952 930
Chr4H 12272 66 3750 19306 17601 11785 17379 3960843 183098 170366 10828 1104 9510 959
Chr5H 13293 83 5348 25177 20633 14760 20748 3574076 207871 164444 10616 1063 8576 861
Chr6H 13718 85 5266 24984 20954 14834 20760 4718860 224375 193880 9305 1126 8074 925
Chr7H 14167 97 5344 25668 20440 15928 21454 3344993 170345 156873 11528 919 9241 883
SUM 93379 552 34238 165618 140558 98560 140821 26340527 1292988 1161741 75130 6848 61184 6313

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