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AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

Haruna Genome

Main information

A chromosome-scale assembly of the Japanese elite malting barley cultivar ‘Haruna Nijo’. In 1978, the malting barley cultivar ‘Haruna Nijo’ was released from Sapporo Breweries (Tokyo, Japan) and has since been used as a donor of high-quality profiles in Japanese malting barley breeding programs.
Species: Hordeum vulgare 
Full name: Haruna Nijo
Germplasm source:

Tokyo, Japan

Genome URL: http://viewer.shigen.info/harunanijo/download.php
DOI: https://doi.org/10.1093/dnares/dsac001
Published year: 2022-01-12
Length Annotation count
Genome
(excluding_ChrUn): 		4284898182 23879874
Chr1H 528447123 2667419
Chr2H 678170541 4256324
Chr3H 639558213 3036091
Chr4H 629672760 2130101
Chr5H 608467472 4406219
Chr6H 565695744 2719174
Chr7H 634886329 4664546

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 9382 41 3260 17922 12820 9911 14915 2286584 116137 108260 19734 546 7152 843
Chr2H 13838 81 5188 27470 19084 15098 21716 3676884 187898 169690 24354 845 8960 1134
Chr3H 11246 58 4303 21755 16125 12713 18748 2572052 143335 129125 23551 652 8729 1035
Chr4H 8190 48 2131 13167 9860 7695 12021 1789199 104246 93316 23116 456 8460 1067
Chr5H 13209 66 5164 27289 19309 14112 21788 3822662 198332 172854 21028 867 8194 1103
Chr6H 9277 38 3256 20014 11593 11050 14346 2312110 135223 108377 20616 582 8067 995
Chr7H 13693 77 5452 28170 19740 15962 22402 4041470 219336 182455 21872 899 8845 1169
SUM 78835 409 28754 155787 108531 86541 125936 20500961 1104507 964077 154271 4847 58407 7346

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