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Search variations between Morex and barley varieties

AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

HOR9043 Genome

Main information

Part of the barley pan-genome, containing chromosome-scale sequence assemblies of 20 diverse varieties of barley. HOR21599 is named by The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Germany, which is originally located in Syria.
Species: Hordeum vulgare 
Full name: HOR9043
Germplasm source:

Syria

Genome URL: https://barley-pangenome.The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)-gatersleben.de/
DOI: https://doi.org/10.1038/s41586-020-2947-8
Published year: 2020-11-25
Length Annotation count
Genome
(excluding_ChrUn): 		4289269249 29004451
Chr1H 525723083 3358201
Chr2H 684336246 4863513
Chr3H 636053469 5330511
Chr4H 629969872 3247786
Chr5H 604087610 3632130
Chr6H 568600391 4223452
Chr7H 640498578 4348858

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 10225 48 3580 18464 15108 10671 14884 2944487 137941 132378 9204 769 6326 894
Chr2H 14679 85 5274 24342 22501 14653 21528 4275991 202471 186849 12062 1055 8199 1113
Chr3H 12994 84 4268 22097 19554 13165 19050 4721552 236238 195095 10799 1168 7737 1047
Chr4H 10198 59 2868 15597 14882 9935 14309 2832556 142252 130759 10773 1054 8111 985
Chr5H 12797 69 5008 22793 19935 13309 19351 3141337 162273 150861 10400 886 7268 931
Chr6H 11647 58 4150 21513 16940 13104 17063 3714553 183643 161990 9590 1003 7123 972
Chr7H 13325 89 4822 23961 20819 14695 20371 3787535 200616 172923 10764 1064 8210 1065
SUM 85865 492 29970 148767 129739 89532 126556 25418011 1265434 1130855 73592 6999 52974 7007

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