>

Search

Search variations between Morex and barley varieties

AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

HOR13942 Genome

Main information

Part of the barley pan-genome, containing chromosome-scale sequence assemblies of 20 diverse varieties of barley. HOR7552 is named by The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Germany, which is originally located in Pakistan.
Species: Hordeum vulgare 
Full name: HOR13942
Germplasm source:

Pakistan

Genome URL: https://barley-pangenome.The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)-gatersleben.de/
DOI: https://doi.org/10.1038/s41586-020-2947-8
Published year: 2020-11-25
Length Annotation count
Genome
(excluding_ChrUn): 		4239730279 27934315
Chr1H 523168208 2863421
Chr2H 671211297 4877104
Chr3H 630677708 5493912
Chr4H 623428415 2534423
Chr5H 604298040 4689878
Chr6H 558526623 4104833
Chr7H 628419988 3370744

Click Chr to change figure

Figure of mummerplot result

Loading...

Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 9341 57 3115 16252 13574 9773 13931 2496621 119496 112678 9632 717 7181 956
Chr2H 14000 90 4870 25583 19345 14734 20035 4283752 212622 186687 12076 1175 8785 1195
Chr3H 13987 92 4963 25526 20443 15222 20759 4856026 238619 205455 10508 1228 8732 1079
Chr4H 8791 51 2447 13500 11836 8662 12938 2193062 108790 104624 10970 814 8827 1033
Chr5H 13779 88 5562 25534 22351 14755 21729 4110737 202709 181126 10227 1063 7995 1115
Chr6H 10770 63 3716 21369 15136 12510 15726 3603519 189359 153827 9557 1097 7833 1059
Chr7H 11912 76 4509 23768 17561 14437 18383 2891572 160827 140326 11047 875 8811 1059
SUM 82580 517 29182 151532 120246 90093 123501 24435289 1232422 1084723 74017 6969 58164 7496

Search

  • Please click "Interval search" or "Gene ID search" to search

    • Interval search

    Genome

    Chromosome (chr1H ~ chr7H)

    Range (The unit is bp, Max range 0.1 Mb)

    Gene ID search

    Genome

    Gene ID