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AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

EC_S1 Genome

Main information

One of the two chromosome‐scale wild barley genomes from contrasting environments in the ‘Evolution Canyon’(EC) system.The ‘Evolution Canyon’ (EC) in Mount Carmel, Israel, has been proposed as an optimal model to understand the effect of environmental heterogeneity on population differentiation and adaptation.The EC has two geologically similar slopes separated by c. 100 m at the bottom of the canyon. These slopes present dramatic abiotic contrasts and biotic divergence due to the significantly higher solar radiation (200%–800% more) on the south‐facing slope (hereafter S_FS), compared to the north‐facing slope (hereafter N_FS).
Species: Hordeum spontaneum  K.  Koch
Full name: two_wild_evolution_canyon_EC_S1
Germplasm source:

Mount Carmel, Israel

Genome URL: https://db.cngb.org/search/assembly/CNA0050881/
DOI: https://doi.org/10.1111/pbi.13917
Published year: 2022-08-29
Length Annotation count
Genome
(excluding_ChrUn): 		4524099973 68947800
Chr1H 554165481 8654004
Chr2H 701211237 10815242
Chr3H 675903409 10620133
Chr4H 668540849 10501925
Chr5H 632176186 9301563
Chr6H 613002666 9012342
Chr7H 679100145 10042591

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 12152 75 4375 22956 21232 15166 16444 6549317 398100 1550341 957 1136 4124 818
Chr2H 14474 86 5412 30268 25318 19604 19504 8039789 503538 2077496 1173 1375 5118 1094
Chr3H 14838 80 5224 26622 26150 17627 19992 8059498 536332 1836104 1390 1505 5308 969
Chr4H 11611 75 3219 18866 19089 12494 14432 7991501 549245 1818992 1427 1491 5159 1076
Chr5H 13916 81 4811 24860 23569 16323 18293 6895921 465198 1766670 1264 1370 4956 957
Chr6H 12096 75 4544 23620 24285 15729 18265 6735996 431714 1679669 1047 1220 4247 889
Chr7H 15167 88 5514 28808 26924 18850 21194 7495074 477940 1873614 1160 1389 5204 925
SUM 94254 560 33099 176000 166567 115793 128124 51767096 3362067 12602886 8418 9486 34116 6728

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