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Search variations between Morex and barley varieties

AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

ZDM02064 Genome

Main information

Part of the barley pan-genome, containing chromosome-scale sequence assemblies of 20 diverse varieties of barley. ZDM02064 is named by The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Germany, which is a hulless barley variety 'ciba damai'(尺八大麦).
Species: Hordeum vulgare 
Full name: ZDM02064
Germplasm source:

China

Genome URL: https://barley-pangenome.The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)-gatersleben.de/
DOI: https://doi.org/10.1038/s41586-020-2947-8
Published year: 2020-11-25
Length Annotation count
Genome
(excluding_ChrUn): 		4086957351 36468918
Chr1H 500012378 3531668
Chr2H 648922534 5031445
Chr3H 604770208 5794921
Chr4H 597403059 4717788
Chr5H 576456374 6134692
Chr6H 556080982 5453126
Chr7H 603311816 5805278

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 8282 59 2481 15473 12738 10035 9299 3098540 187521 134954 1277 893 6531 607
Chr2H 12780 68 4313 22615 19021 15066 14443 4454642 219474 195479 1600 1056 8300 886
Chr3H 12282 83 3902 22293 18495 14814 13883 5166839 257150 213580 1574 1165 7916 866
Chr4H 9981 60 2569 16754 12971 11152 10110 4208081 206324 178807 1505 1088 8653 934
Chr5H 13549 91 4575 24029 20863 15734 15494 5460735 278271 225012 1592 1205 7629 954
Chr6H 11099 62 3808 20529 20483 13636 14765 4867729 236674 196739 1443 1106 7286 855
Chr7H 13520 95 4573 24153 19676 16313 15105 5160996 258026 216668 1649 1111 7937 945
SUM 81493 518 26221 145846 124247 96750 93099 32417562 1643440 1361239 10640 7624 54252 6047

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