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Search variations between Morex and barley varieties

AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

ZDM01467 Genome

Main information

Part of the barley pan-genome, containing chromosome-scale sequence assemblies of 20 diverse varieties of barley. ZDM01467 is named by The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Germany, which is a hulless barley variety 'dulihuang'(肚里黄青稞).
Species: Hordeum vulgare 
Full name: ZDM01467
Germplasm source:

China

Genome URL: https://barley-pangenome.The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)-gatersleben.de/
DOI: https://doi.org/10.1038/s41586-020-2947-8
Published year: 2020-11-25
Length Annotation count
Genome
(excluding_ChrUn): 		4468926168 34756236
Chr1H 550024188 3275395
Chr2H 710194481 3271257
Chr3H 661081403 5995479
Chr4H 659460550 4878610
Chr5H 630572514 5774904
Chr6H 598618390 4922415
Chr7H 658974642 6638176

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 11375 60 4162 21560 15832 12246 18221 2814319 141791 131490 23528 751 7803 829
Chr2H 14236 86 5504 28094 19758 16122 23142 2740163 147694 141384 31493 735 9878 1088
Chr3H 16217 95 6567 31997 23996 18234 26711 5255760 256101 226318 26502 1099 9192 979
Chr4H 13516 77 4589 23713 18574 13681 20833 4260392 210021 191757 27178 1059 9246 1042
Chr5H 16396 91 7064 32701 24829 18082 27739 5057510 241697 219303 24430 1073 8528 923
Chr6H 14509 61 5952 28631 21687 16201 23881 4305878 198419 186976 24137 977 8145 916
Chr7H 17653 121 7694 37933 26948 21187 29311 5799743 304142 251206 25556 1235 9259 994
SUM 103902 591 41532 204629 151624 115753 169838 30233765 1499865 1348434 182824 6929 62051 6771

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