>

Search

Search variations between Morex and barley varieties

AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

RGT Genome

Main information

Part of the barley pan-genome, containing chromosome-scale sequence assemblies of 20 diverse varieties of barley. RGT is the most widely accepted variety in the world, which is european variety, strong straw and well-suited to intensive management.
Species: Hordeum vulgare 
Full name: RGT
Germplasm source:

Germany

Genome URL: https://barley-pangenome.The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)-gatersleben.de/
DOI: https://doi.org/10.1038/s41586-020-2947-8
Published year: 2020-11-25
Length Annotation count
Genome
(excluding_ChrUn): 		4255809126 26320016
Chr1H 521073757 3042144
Chr2H 672273650 4629015
Chr3H 634137895 3684882
Chr4H 624121443 2386168
Chr5H 607506942 4115692
Chr6H 564293627 3736336
Chr7H 632401812 4725779

Click Chr to change figure

Figure of mummerplot result

Loading...

Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 9515 67 3169 15814 15703 9412 14730 2651599 130470 124902 10969 804 3926 1201
Chr2H 14078 79 5515 24656 24085 14652 22339 4036477 206025 187291 13749 1133 4997 1416
Chr3H 11920 61 4092 18039 19982 11171 18766 3207562 160088 153302 13245 945 4707 1299
Chr4H 8526 41 2042 9964 13636 7114 12143 2054315 108123 104912 13276 800 4974 1358
Chr5H 12615 62 5196 21784 24097 13120 21885 3579424 186424 166242 12106 1036 4570 1268
Chr6H 11007 59 3838 18512 18260 11038 16773 3270435 162585 148793 11238 926 4608 1245
Chr7H 9812 65 2984 17637 18903 10503 16461 4084698 298690 182378 12946 1535 6462 1358
SUM 77473 434 26836 126406 134666 77010 123097 22884510 1252405 1067820 87529 7179 34244 9145

Search

  • Please click "Interval search" or "Gene ID search" to search

    • Interval search

    Genome

    Chromosome (chr1H ~ chr7H)

    Range (The unit is bp, Max range 0.1 Mb)

    Gene ID search

    Genome

    Gene ID