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Search variations between Morex and barley varieties

AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

QK Genome

Main information

Qingke, the local name of hulless barley in the Qinghai-Xizang Plateau, is a staple food for Tibetans. The availability of its reference genome sequences could be useful for studies on breeding and molecular evolution.
Species: Hordeum vulgare  var.  coeleste
Full name: zangqing320
Germplasm source:

Xizang, China

Genome URL: http://wheatomics.sdau.edu.cn/
DOI: https://doi.org/10.1111/pbi.12826
Published year: 2017-10-05
Length Annotation count
Genome
(excluding_ChrUn): 		4588201397 25322497
Chr1H 559065601 2357621
Chr2H 768771193 3847184
Chr3H 700365962 4133242
Chr4H 647651135 3512527
Chr5H 670605629 4921915
Chr6H 583924723 3388735
Chr7H 657817154 3161273

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 10095 4066 8389 15015 29851 8836 49643 1849129 154933 116222 13555 1148 24741 608
Chr2H 11691 4328 7500 16890 47072 13015 64180 3077047 293840 188016 14714 1542 24679 1367
Chr3H 9921 4455 7340 13207 42729 8363 59317 3415933 288228 186682 10599 1817 19020 1024
Chr4H 10812 4302 8623 19136 32787 11639 53592 2878671 217240 152443 13974 1207 27268 605
Chr5H 9726 4483 7570 21252 49008 10897 62626 3740160 712059 178198 13505 1173 17232 2024
Chr6H 10029 4418 8953 28626 30630 15149 51295 2749881 210438 136805 12486 990 31666 546
Chr7H 13233 5300 11927 34183 40723 18631 67374 2410472 208583 144151 19927 1495 46350 664
SUM 75507 31352 60302 148309 272800 86530 408027 20121293 2085321 1102517 98760 9372 190956 6838

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