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Search variations between Morex and barley varieties

AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

OUH Genome

Main information

A chromosome-scale assembly of wild barley accession “OUH602”.The wild barley accession “OUH602,” which has entirely dark spikes, is categorized as var. transcaspicum Vavilov and is endemic to Central Asia. “OUH602” has been used as a key genotype in genetic and genomic studies.
Species: Hordeum spontaneum 
Full name: OUH602
Germplasm source:

Central Asia

Genome URL: http://viewer.shigen.info/barley/download.php
DOI: https://doi.org/10.1093/g3journal/jkab244
Published year: 2021-07-13
Length Annotation count
Genome
(excluding_ChrUn): 		4321139878 42201512
Chr1H 532083992 4480323
Chr2H 684376481 6863015
Chr3H 642597466 7272153
Chr4H 631979072 4688885
Chr5H 607115911 6802788
Chr6H 582960187 5677377
Chr7H 640026769 6416971

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 13811 71 6558 29083 21783 15172 24265 3901635 184556 173398 19476 781 7628 934
Chr2H 19506 100 9067 40383 28095 20743 32451 6023508 282351 260828 24763 1210 9695 1226
Chr3H 17450 116 7823 37093 26283 19212 29464 6368852 361576 267343 22789 1388 9602 1184
Chr4H 13452 60 5245 24651 18465 13457 21494 4088085 204813 185635 23574 889 8535 1214
Chr5H 17787 103 9023 39000 27672 20337 31354 5962822 308582 252275 20747 1264 8933 1075
Chr6H 14853 64 6874 30731 24175 16361 26473 4975222 249788 213987 20952 1007 8160 1156
Chr7H 18550 117 9252 40802 27755 22165 31695 5588882 290497 246873 22709 1081 9346 1189
SUM 115409 631 53842 241743 174228 127447 197196 36909006 1882163 1600339 155010 7620 61899 7978

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