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AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

Igri Genome

Main information

Part of the barley pan-genome, containing chromosome-scale sequence assemblies of 20 diverse varieties of barley. Igri is the two-rowed winter barley cultivar from Germany.
Species: Hordeum vulgare 
Full name: Igri
Germplasm source:

Germany

Genome URL: https://barley-pangenome.The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)-gatersleben.de/
DOI: https://doi.org/10.1038/s41586-020-2947-8
Published year: 2020-11-25
Length Annotation count
Genome
(excluding_ChrUn): 		4217729201 26240676
Chr1H 519546829 2922750
Chr2H 665715246 4920611
Chr3H 624683667 3961772
Chr4H 621078253 2551863
Chr5H 600910593 4266373
Chr6H 558953701 3067914
Chr7H 626840912 4549393

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 8500 46 2535 14818 14003 8642 12803 2541391 130543 118318 14212 812 3949 1248
Chr2H 13566 83 4872 24161 23718 14084 20812 4314305 214962 194859 14625 1228 4724 1467
Chr3H 11418 75 3902 19271 18784 11770 17354 3459709 175693 161286 13946 944 4789 1341
Chr4H 8141 43 1864 10333 13816 7125 11507 2199866 119588 111567 14218 841 4834 1475
Chr5H 11835 68 4519 21392 22164 12295 19236 3724445 195147 169742 12851 1057 4526 1378
Chr6H 9106 56 2881 16437 15246 9940 13739 2662073 139636 126416 12908 826 4296 1370
Chr7H 11686 72 3918 20454 20450 12234 18151 3981844 215375 177317 14090 1127 5249 1498
SUM 74252 443 24491 126866 128181 76090 113602 22883633 1190944 1059505 96850 6835 32367 9777

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