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Search variations between Morex and barley varieties

AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

HOR8148 Genome

Main information

Part of the barley pan-genome, containing chromosome-scale sequence assemblies of 20 diverse varieties of barley. HOR13942 is named by The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Germany, which is originally located in Spain.
Species: Hordeum vulgare 
Full name: HOR8148
Germplasm source:

Spain

Genome URL: https://barley-pangenome.The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)-gatersleben.de/
DOI: https://doi.org/10.1038/s41586-020-2947-8
Published year: 2020-11-25
Length Annotation count
Genome
(excluding_ChrUn): 		4251006494 29651027
Chr1H 524514255 3169014
Chr2H 670202054 5207883
Chr3H 631946783 4205694
Chr4H 626743494 2596056
Chr5H 600801835 5048527
Chr6H 566971015 4346870
Chr7H 629827058 5076983

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 9435 52 3285 16067 15294 9139 16136 2739201 151569 127200 12476 710 9891 1729
Chr2H 15078 84 6011 27756 23286 15765 24658 4554723 225292 201060 15092 1026 11860 2119
Chr3H 12478 60 4666 20510 18591 12344 20403 3667599 182211 166948 14913 786 11915 2001
Chr4H 9467 43 2768 12318 14413 8508 14998 2212376 121704 111970 15023 571 12345 2232
Chr5H 14101 68 6087 26193 22893 15196 24577 4433031 211990 190757 13072 926 10400 1874
Chr6H 11436 57 4169 21187 17884 12413 18956 3806924 197723 162022 12854 855 10977 1923
Chr7H 13507 74 5137 27028 21782 14869 22861 4427159 243855 191856 13862 1069 11646 2005
SUM 85502 438 32123 151059 134143 88234 142589 25841013 1334344 1151813 97292 5943 79034 13883

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