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Search variations between Morex and barley varieties

AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

HOR7552 Genome

Main information

Part of the barley pan-genome, containing chromosome-scale sequence assemblies of 20 diverse varieties of barley. HOR13821 is named by The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Germany, which is originally located in Turkey.
Species: Hordeum vulgare 
Full name: HOR7552
Germplasm source:

Turkey

Genome URL: https://barley-pangenome.The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)-gatersleben.de/
DOI: https://doi.org/10.1038/s41586-020-2947-8
Published year: 2020-11-25
Length Annotation count
Genome
(excluding_ChrUn): 		4242212611 38348553
Chr1H 522114480 3353229
Chr2H 671530377 5921525
Chr3H 631910401 6208944
Chr4H 622474059 4828753
Chr5H 598240357 6299527
Chr6H 562137082 5171058
Chr7H 633805855 6565517

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 10103 59 3486 16365 17107 9576 15693 2933504 145181 135155 9909 839 3900 1146
Chr2H 15796 91 6192 27150 26484 15918 24585 5228983 254536 224487 12008 1309 5126 1543
Chr3H 15390 77 6089 26594 26292 15671 24141 5510413 258537 232596 10859 1210 4817 1347
Chr4H 11881 68 3655 17492 20320 10864 17511 4276412 202965 190555 10446 1193 4978 1481
Chr5H 15285 89 6494 27769 26559 15884 24228 5585886 268972 235077 9876 1284 4915 1373
Chr6H 12877 64 5064 23107 21987 13734 20068 4579128 216568 197497 9229 1124 4608 1378
Chr7H 16373 95 6978 29176 28642 17099 26076 5806544 289688 245627 10356 1392 5300 1445
SUM 97705 543 37958 167653 167391 98746 152302 33920870 1636447 1460994 72683 8351 33644 9713

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