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Search variations between Morex and barley varieties

AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

HOR3365 Genome

Main information

Part of the barley pan-genome, containing chromosome-scale sequence assemblies of 20 diverse varieties of barley. HOR10350 is named by The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Germany, which is originally located in Switzerland.
Species: Hordeum vulgare 
Full name: HOR3365
Germplasm source:

Switzerland

Genome URL: https://barley-pangenome.The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)-gatersleben.de/
DOI: https://doi.org/10.1038/s41586-020-2947-8
Published year: 2020-11-25
Length Annotation count
Genome
(excluding_ChrUn): 		4527071677 29230608
Chr1H 559656399 3625745
Chr2H 717517502 4994060
Chr3H 672450454 5229899
Chr4H 665297378 3884089
Chr5H 636785599 3115221
Chr6H 599706080 4393560
Chr7H 675658265 3988034

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 11819 62 4491 21683 17114 11716 19950 3151941 147743 143070 19056 735 7810 860
Chr2H 16260 95 7099 31588 23752 16842 27788 4331366 216484 194632 23882 948 9935 1022
Chr3H 14713 91 6080 27175 21809 14872 25267 4547171 255722 199664 22142 963 9617 1041
Chr4H 11624 63 3697 17716 15555 10133 18543 3370392 175362 159738 22449 802 9252 1139
Chr5H 13417 59 5669 25351 18042 13876 22499 2626366 147995 132534 22119 640 9112 890
Chr6H 12810 73 5384 25592 18611 14220 21680 3826918 191859 170926 19974 801 8294 988
Chr7H 14677 80 6346 28367 21628 16114 25668 3423979 171017 161287 22985 721 9731 971
SUM 95320 523 38766 177472 136511 97773 161395 25278133 1306182 1161851 152607 5610 63751 6911

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