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Search variations between Morex and barley varieties

AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

HOR3081 Genome

Main information

Part of the barley pan-genome, containing chromosome-scale sequence assemblies of 20 diverse varieties of barley. HOR9043 is named by The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Germany, which is originally located in Switzerland.
Species: Hordeum vulgare 
Full name: HOR3081
Germplasm source:

Switzerland

Genome URL: https://barley-pangenome.The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)-gatersleben.de/
DOI: https://doi.org/10.1038/s41586-020-2947-8
Published year: 2020-11-25
Length Annotation count
Genome
(excluding_ChrUn): 		4234145491 22793930
Chr1H 521174834 2939216
Chr2H 667717957 4854887
Chr3H 631819663 3694524
Chr4H 624692602 2549982
Chr5H 597351075 2880816
Chr6H 561737938 3285754
Chr7H 629651422 2588751

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 8693 40 2767 14292 15288 8498 13589 2566884 123679 118678 11912 807 3799 1220
Chr2H 13457 77 4809 23504 23191 13699 20905 4256098 213594 191327 14612 1256 4985 1512
Chr3H 11201 77 4002 18451 20669 11365 18504 3214033 161988 151979 13689 941 4735 1387
Chr4H 8083 40 2010 10281 15364 7211 12274 2204321 111129 111031 13767 873 4997 1419
Chr5H 10311 40 3674 17019 17877 10127 16416 2465238 136304 126417 13882 824 4441 1361
Chr6H 8315 44 2746 14565 13910 8529 12947 2855182 167189 132323 12699 994 4827 1407
Chr7H 9640 56 3255 15957 17406 10373 15808 2191361 128509 118359 14777 847 4852 1428
SUM 69700 374 23263 114069 123705 69802 110443 19753117 1042392 950114 95338 6542 32636 9734

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