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Search variations between Morex and barley varieties

AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

HOR21599 Genome

Main information

Part of the barley pan-genome, containing chromosome-scale sequence assemblies of 20 diverse varieties of barley. HOR8148 is named by The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Germany, which is originally located in Turkey.
Species: Hordeum vulgare 
Full name: HOR21599
Germplasm source:

Turkey

Genome URL: https://barley-pangenome.The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)-gatersleben.de/
DOI: https://doi.org/10.1038/s41586-020-2947-8
Published year: 2020-11-25
Length Annotation count
Genome
(excluding_ChrUn): 		4363096834 35630204
Chr1H 537457279 4322759
Chr2H 685947972 6291299
Chr3H 649921694 5617017
Chr4H 641099225 2861026
Chr5H 611845738 6112500
Chr6H 581041262 4866733
Chr7H 655783664 5558870

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 11941 58 4286 20421 18089 11732 17778 3822134 177796 162282 8706 956 6835 925
Chr2H 17189 106 7105 32684 25873 18941 25915 5564771 254664 237706 10584 1320 8615 1113
Chr3H 14557 93 5293 24927 22769 15115 22260 4976058 235230 208216 10393 1158 8322 1021
Chr4H 10147 44 3035 15470 14597 9886 14574 2473803 126593 118937 10670 928 8570 917
Chr5H 15601 93 6541 30774 24938 17629 24204 5397459 271196 226071 9045 1239 7681 1049
Chr6H 12200 69 4477 23228 19203 13655 18756 4303345 211471 176864 9150 1069 7860 930
Chr7H 15678 108 6206 28067 26183 16920 24974 4885657 246075 210570 9861 1185 8552 1064
SUM 97313 571 36943 175571 151652 103878 148461 31423227 1523025 1340646 68409 7855 56435 7019

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