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Search variations between Morex and barley varieties

AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

HOR13821 Genome

Main information

Part of the barley pan-genome, containing chromosome-scale sequence assemblies of 20 diverse varieties of barley. HOR3365 is named by The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Germany, which is originally located in Russia.
Species: Hordeum vulgare 
Full name: HOR13821
Germplasm source:

Russia

Genome URL: https://barley-pangenome.The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)-gatersleben.de/
DOI: https://doi.org/10.1038/s41586-020-2947-8
Published year: 2020-11-25
Length Annotation count
Genome
(excluding_ChrUn): 		4333589988 27881992
Chr1H 536602846 3591890
Chr2H 685423969 4870041
Chr3H 640667275 4743900
Chr4H 639123876 2321697
Chr5H 612949391 3260744
Chr6H 577192767 4196372
Chr7H 641629864 4897348

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 10839 63 3948 19355 18056 11410 17442 3142236 153319 139999 9902 855 6658 853
Chr2H 14660 90 5298 25893 21874 15193 21831 4264226 215040 187778 12703 1161 8587 1067
Chr3H 11665 66 3843 20134 17303 11574 17342 4157010 239924 178528 12129 1162 8641 987
Chr4H 9254 59 2553 12927 13621 8648 13805 1980927 105852 100926 12596 862 8629 908
Chr5H 11797 77 4678 22110 19571 13009 19262 2798251 151634 134253 12001 766 7821 975
Chr6H 11572 74 4208 21516 17816 12617 17892 3688193 182569 157969 10692 983 7624 924
Chr7H 12873 83 4486 24052 19587 13959 19608 4284739 240256 185015 11814 1219 8832 1034
SUM 82660 512 29014 145987 127828 86410 127182 24315582 1288594 1084468 81837 7008 56792 6748

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