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Search variations between Morex and barley varieties

AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

HOR10350 Genome

Main information

Part of the barley pan-genome, containing chromosome-scale sequence assemblies of 20 diverse varieties of barley. HOR3081 is named by The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Germany, which is originally located in Poland.
Species: Hordeum vulgare 
Full name: HOR10350
Germplasm source:

Poland

Genome URL: https://barley-pangenome.The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)-gatersleben.de/
DOI: https://doi.org/10.1038/s41586-020-2947-8
Published year: 2020-11-25
Length Annotation count
Genome
(excluding_ChrUn): 		4147160234 29057613
Chr1H 513014082 3153161
Chr2H 653624577 5372845
Chr3H 616219606 5186401
Chr4H 610044819 2868462
Chr5H 583417444 3451979
Chr6H 550735148 4144837
Chr7H 620104558 4879928

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 8715 49 2389 13868 13408 9318 10861 2789475 128810 122185 1115 671 9221 590
Chr2H 13657 79 4062 22454 19671 15340 15614 4785007 215640 201727 1574 1017 11588 866
Chr3H 12032 78 3276 18365 17281 12853 13895 4626330 219053 192407 1553 1025 11167 808
Chr4H 7900 54 1897 11729 12206 8557 9790 2527408 121128 111594 1241 693 12015 642
Chr5H 11044 57 3484 17960 16463 12121 13258 3008948 161748 140299 1399 807 10628 635
Chr6H 9411 59 2728 17121 14643 11631 11705 3663861 196166 154105 1328 899 10504 753
Chr7H 12333 71 3653 19376 19397 13609 15750 4305510 230035 185843 1578 1115 11434 878
SUM 75092 447 21489 120873 113069 83429 90873 25706539 1272580 1108160 9788 6227 76557 5172

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