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AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

EC_N1 Genome

Main information

One of the two chromosome-scale wild barley genomes from contrasting environments in the ‘Evolution Canyon’(EC) system.The 'Evolution Canyon' (EC) in Mount Carmel, Israel, has been proposed as an optimal model to understand the effect of environmental heterogeneity on population differentiation and adaptation.The EC has two geologically similar slopes separated by c. 100 m at the bottom of the canyon. These slopes present dramatic abiotic contrasts and biotic divergence due to the significantly higher solar radiation (200%–800% more) on the south-facing slope (hereafter S_FS), compared to the north‐facing slope (hereafter N_FS).
Species: Hordeum spontaneum  K.  Koch
Full name: two_wild_evolution_canyon_EC_N1
Germplasm source:

Mount Carmel, Israel

Genome URL: https://db.cngb.org/search/assembly/CNA0050882/
DOI: https://doi.org/10.1111/pbi.13917
Published year: 2022-08-29
Length Annotation count
Genome
(excluding_ChrUn): 		4471941444 72658142
Chr1H 560836502 8409327
Chr2H 725682262 11779504
Chr3H 649336094 10954864
Chr4H 655003473 11037564
Chr5H 618953218 10155046
Chr6H 621017135 9665584
Chr7H 641112760 10656253

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 9240 51 2854 19129 15702 12408 12317 6029645 437174 1814948 1015 1229 5136 691
Chr2H 13632 86 4169 25768 22356 16949 17556 8578770 603623 2418911 1500 1683 6860 1063
Chr3H 12192 91 4651 31374 19228 20558 16085 8116769 540500 2116668 1388 1491 5917 862
Chr4H 11950 80 3422 21419 19412 14514 15645 8264193 541084 2080756 1308 1358 5640 1073
Chr5H 14038 87 5131 28163 24154 18769 19602 7520613 484421 1963659 1184 1349 5678 918
Chr6H 10810 67 3686 22218 19577 14694 15399 6992958 480111 2043075 1074 1238 5334 872
Chr7H 13792 80 5372 33341 22299 21706 18668 7767650 523336 2168774 1222 1358 5774 940
SUM 85654 542 29285 181412 142728 119598 115272 53270598 3610249 14606791 8691 9706 40339 6419

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