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Search variations between Morex and barley varieties

AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

Barke Genome

Main information

Part of the barley pan-genome, containing chromosome-scale sequence assemblies of 20 diverse varieties of barley. Barke (Barley) is a German-bred two-row spring brewing barley variety developed by Josef Breun GmbH & Co. KG of Herzogenaurach, Bavaria, and introduced in 1996. It quickly gained a reputation for exceptional agronomic, malting, and brewing performance, and rapidly became one of the most popular brewing barley varieties worldwide.
Species: Hordeum vulgare 
Full name: Barke
Germplasm source:

Germany

Genome URL: https://barley-pangenome.The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)-gatersleben.de/
DOI: https://doi.org/10.1038/s41586-020-2947-8
Published year: 2020-11-25
Length Annotation count
Genome
(excluding_ChrUn): 		4144430374 25716740
Chr1H 512023576 2889976
Chr2H 652551272 4239985
Chr3H 615767531 3586026
Chr4H 605571303 2326625
Chr5H 592249714 3965671
Chr6H 549757368 4158466
Chr7H 616509610 4549991

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 8123 40 2287 13776 13543 9424 10905 2543797 123426 112536 1187 656 8619 576
Chr2H 11607 70 3473 20243 17808 14073 14507 3721347 200431 164839 1557 999 10822 792
Chr3H 9982 77 2660 15932 14394 11442 12101 3163533 155759 138987 1409 782 10318 698
Chr4H 6764 46 1371 10347 9403 7321 7929 2047639 95673 90490 1181 596 11137 620
Chr5H 11151 68 3626 19000 19287 12933 15308 3485874 176110 155199 1387 862 9521 745
Chr6H 9973 65 2574 16416 14166 11294 11780 3704724 174846 152453 1352 856 9397 740
Chr7H 11719 83 3335 19484 18194 13497 15152 4022897 202466 172590 1500 1016 10627 792
SUM 69319 449 19326 115198 106795 79984 87682 22689811 1128711 987094 9573 5767 70441 4963

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