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Search variations between Morex and barley varieties

AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

B1K-04-12 Genome

Main information

Part of the barley pan-genome, containing chromosome-scale sequence assemblies of 20 diverse varieties of barley. The Barley1K (B1K) infrastructure consists of 1020 accessions collected in a hierarchical sampling mode (HSM) from 51 sites across Israel and represents the wide adaptive niche of the modern barley’s ancestor. B1K-04-12 is a desert ecotype collected at Ein Prat.
Species: Hordeum spontaneum 
Full name: B1K-04-12
Germplasm source:

Ein Prat, Israsel

Genome URL: https://barley-pangenome.The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)-gatersleben.de/
DOI: https://doi.org/10.1038/s41586-020-2947-8
Published year: 2020-11-25
Length Annotation count
Genome
(excluding_ChrUn): 		4214443340 46455234
Chr1H 520603772 5809663
Chr2H 661076038 7160376
Chr3H 626572591 7165019
Chr4H 612852138 6365722
Chr5H 598896166 6145815
Chr6H 570629545 6138313
Chr7H 623813090 7670326

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 12715 90 4217 20243 20188 13237 15807 5173623 269118 211171 1574 1096 7513 826
Chr2H 17023 99 5630 27150 25207 17666 19829 6396523 297142 265742 1819 1307 9055 966
Chr3H 15743 99 5197 24495 24993 16357 19258 6397074 317230 260815 1758 1316 8887 927
Chr4H 13248 92 3550 19824 19802 13682 15521 5708244 271425 227295 1731 1200 9317 985
Chr5H 15481 86 6089 25965 27694 16924 20970 5448604 267699 231825 1637 1185 8214 918
Chr6H 13775 74 5099 24357 26620 16104 19760 5490671 242607 220884 1524 1086 7678 878
Chr7H 17775 106 6589 29895 28522 19371 22382 6846776 327666 277908 1742 1420 8626 993
SUM 105760 646 36371 171929 173026 113341 133527 41461515 1992887 1695640 11785 8610 59290 6493

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