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AAC 10TJ18 Aizu6 Akashinriki B1K-04-12 Barke Bonus Bowman Chikurin-Ibaraki EC-N1 EC-S1 Foma FT144 FT262 FT286 FT333 FT628 FT67 FT880 GoldenMelon GP Haruna HID055 HID101 HID249 HID357 HID380 Hockett HOR10350 HOR13821 HOR13942 HOR21599 HOR3081 HOR3365 HOR7552 HOR8148 HOR9043 HOR-10096 HOR-10892 HOR-1168 HOR-12184 HOR-12541 HOR-13594 HOR-13663 HOR-14061 HOR-14121 HOR-14273 HOR-1702 HOR-18321 HOR-19184 HOR-21256 HOR-21322 HOR-21595 HOR-2180 HOR-2779 HOR-2830 HOR-3474 HOR-4224 HOR-495 HOR-6220 HOR-7172 HOR-7385 HOR-8117 HOR-9972 Igri Maximus OUH OUN333 Qingke RGT WBDC-078 WBDC-103 WBDC-133 WBDC-184 WBDC-199 WBDC-207 WBDC-237 WBDC-348 WBDC-349 ZDM01467 ZDM02064

Akashinriki Genome

Main information

Part of the barley pan-genome, containing chromosome-scale sequence assemblies of 20 diverse varieties of barley. Akashinriki is a Japanese six-row food barley and is unrelated to the other donor genotypes used in the barley EST discovery efforts. A series of mutants were induced on Akashinriki at Okayama University and used for genetic analysis and trait-based genetic map construction in the barley research community.
Species: Hordeum vulgare 
Full name: Akashinriki
Germplasm source:

Japan

Genome URL: https://barley-pangenome.The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)-gatersleben.de/
DOI: https://doi.org/10.1038/s41586-020-2947-8
Published year: 2020-11-25
Length Annotation count
Genome
(excluding_ChrUn): 		4402570110 35262032
Chr1H 541700351 3586838
Chr2H 696809892 5019354
Chr3H 655542733 6001899
Chr4H 648987779 4749861
Chr5H 622068216 6248806
Chr6H 583456046 4973376
Chr7H 654005093 4681898

Click Chr to change figure

Figure of mummerplot result

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Table of syri output summary

CHR Structural annotation Sequence annotation
Syntenic regions Inversions Translocations Duplications (reference) Duplications (query) Not aligned (reference) Not aligned (query) SNPs Insertions Deletions Copygains Copylosses Highly diverged Tandem repeats
Chr1H 10563 66 3947 19427 16891 11052 16595 3104358 187775 139541 10131 919 7471 681
Chr2H 16042 96 6615 28916 24239 16822 25419 4389032 212231 197084 12618 1017 8924 895
Chr3H 15601 103 6108 27076 24149 15994 24325 5311007 256394 222052 11463 1181 8826 878
Chr4H 12904 82 4200 19416 19517 11983 19242 4195766 198658 182439 11038 1189 9031 907
Chr5H 16103 127 6938 30424 26388 17171 26207 5521639 271595 230457 10425 1204 8245 872
Chr6H 13637 77 5466 25229 20298 14969 21054 4389524 210355 184628 10122 1068 7908 824
Chr7H 15258 117 6319 28867 23375 17219 24132 4073669 209620 183701 11736 984 8765 804
SUM 100108 668 39593 179355 154857 105210 156974 30984995 1546628 1339902 77533 7562 59170 5861

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